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  <section id="run-perl">
<h1>run_perl<a class="headerlink" href="#run-perl" title="Permalink to this heading"></a></h1>
<dl class="py function">
<dt class="sig sig-object py" id="gslab_make.run_program.run_perl">
<span class="sig-name descname"><span class="pre">run_perl</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">paths</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">program</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#gslab_make.run_program.run_perl" title="Permalink to this definition"></a></dt>
<dd><p>Runs script <code class="docutils literal notranslate"><span class="pre">program</span></code> using system command, with script specified
in the form of <code class="docutils literal notranslate"><span class="pre">script.pl</span></code>. Status messages are appended to file <code class="docutils literal notranslate"><span class="pre">makelog</span></code>.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>paths</strong> (<em>dict</em>) – Dictionary of paths. Dictionary should contain values for all keys listed below.</p></li>
<li><p><strong>program</strong> (<em>str</em>) – Path of script to run.</p></li>
</ul>
</dd>
<dt class="field-even">Path Keys<span class="colon">:</span></dt>
<dd class="field-even"><p><strong>makelog</strong> (<em>str</em>) – Path of makelog.</p>
</dd>
</dl>
<div class="admonition note">
<p class="admonition-title">Note</p>
<p>We recommend leaving all other parameters to their defaults.</p>
</div>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>osname</strong> (<em>str</em><em>, </em><em>optional</em>) – Name of OS. Used to determine syntax of system command. Defaults to <code class="docutils literal notranslate"><span class="pre">os.name</span></code>.</p></li>
<li><p><strong>shell</strong> (<cite>bool</cite>, optional) – See <a class="reference external" href="https://docs.python.org/3/library/subprocess.html#frequently-used-arguments">here</a>.
Defaults to <code class="docutils literal notranslate"><span class="pre">True</span></code>.</p></li>
<li><p><strong>log</strong> (<em>str</em><em>, </em><em>optional</em>) – Path of program log. Program log is only written if specified.
Defaults to <code class="docutils literal notranslate"><span class="pre">''</span></code> (i.e., not written).</p></li>
<li><p><strong>executable</strong> (<em>str</em><em>, </em><em>optional</em>) – Executable to use for system command.
Defaults to executable specified in <a class="reference internal" href="../../program.html#default-settings"><span class="std std-ref">default settings</span></a>.</p></li>
<li><p><strong>option</strong> (<em>str</em><em>, </em><em>optional</em>) – Options for system command. Defaults to options specified in <a class="reference internal" href="../../program.html#default-settings"><span class="std std-ref">default settings</span></a>.</p></li>
<li><p><strong>args</strong> (<em>str</em><em>, </em><em>optional</em>) – Arguments for system command. Defaults to no arguments.</p></li>
</ul>
</dd>
<dt class="field-even">Return type<span class="colon">:</span></dt>
<dd class="field-even"><p>None</p>
</dd>
</dl>
<p class="rubric">Example</p>
<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">run_perl</span><span class="p">(</span><span class="n">paths</span><span class="p">,</span> <span class="n">program</span> <span class="o">=</span> <span class="s1">&#39;script.pl&#39;</span><span class="p">)</span>
</pre></div>
</div>
</dd></dl>

</section>


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